| Experimental Factor Ontology (EFO) Information | |
| Identifier | EFO_0004587 |
| Description | A quantification of lymphocytes in blood. | Trait category |
Hematological measurement
|
| Synonym | lymphocyte counts |
| Mapped terms |
4 mapped terms
|
| Child trait(s) | lymphocyte percentage of leukocytes |
| Polygenic Score ID & Name | PGS Publication ID (PGP) | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants |
Ancestry distribution GWAS Dev Eval |
Scoring File (FTP Link) |
|---|---|---|---|---|---|---|
| PGS000097 (lymph) |
PGP000051 | Xu Y et al. Cell Genom (2022) |
Lymphocyte count | lymphocyte count | 24,646 | https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000097/ScoringFiles/PGS000097.txt.gz | |
| PGS000098 (lymph_p) |
PGP000051 | Xu Y et al. Cell Genom (2022) |
Lymphocyte percentage of white cells | lymphocyte percentage of leukocytes | 22,363 | https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000098/ScoringFiles/PGS000098.txt.gz | |
| PGS000172 (lymph) |
PGP000078 | Vuckovic D et al. Cell (2020) |
Lymphocyte count | lymphocyte count | 621 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000172/ScoringFiles/PGS000172.txt.gz |
| PGS000173 (lymph_p) |
PGP000078 | Vuckovic D et al. Cell (2020) |
Lymphocyte percentage of white cells | lymphocyte percentage of leukocytes | 472 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000173/ScoringFiles/PGS000173.txt.gz |
| PGS001199 (GBE_INI30120) |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Lymphocyte count | lymphocyte count | 4,212 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001199/ScoringFiles/PGS001199.txt.gz |
| PGS001414 (GBE_INI30180) |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Lymphocyte % | lymphocyte percentage of leukocytes | 15,143 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001414/ScoringFiles/PGS001414.txt.gz |
| PGS001965 (portability-PLR_log_lymphocyte) |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Lymphocyte count | lymphocyte count | 76,535 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001965/ScoringFiles/PGS001965.txt.gz |
| PGS001986 (portability-PLR_lymphocyte_perc) |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Lymphocyte percentage | lymphocyte percentage of leukocytes | 66,778 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001986/ScoringFiles/PGS001986.txt.gz |
| PGS002183 (portability-ldpred2_log_lymphocyte) |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Lymphocyte count | lymphocyte count | 814,921 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002183/ScoringFiles/PGS002183.txt.gz |
| PGS002203 (portability-ldpred2_lymphocyte_perc) |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Lymphocyte percentage | lymphocyte percentage of leukocytes | 775,312 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002203/ScoringFiles/PGS002203.txt.gz |
| PGS002338 (blood_LYMPHOCYTE_COUNT.BOLT-LMM) |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Lymphocyte count | lymphocyte count | 1,109,311 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002338/ScoringFiles/PGS002338.txt.gz |
| PGS002370 (blood_LYMPHOCYTE_COUNT.BOLT-LMM-BBJ) |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Lymphocyte count | lymphocyte count | 920,935 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002370/ScoringFiles/PGS002370.txt.gz |
| PGS002410 (blood_LYMPHOCYTE_COUNT.P+T.0.0001) |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Lymphocyte count | lymphocyte count | 14,889 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002410/ScoringFiles/PGS002410.txt.gz |
| PGS002459 (blood_LYMPHOCYTE_COUNT.P+T.0.001) |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Lymphocyte count | lymphocyte count | 36,117 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002459/ScoringFiles/PGS002459.txt.gz |
| PGS002508 (blood_LYMPHOCYTE_COUNT.P+T.0.01) |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Lymphocyte count | lymphocyte count | 140,957 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002508/ScoringFiles/PGS002508.txt.gz |
| PGS002557 (blood_LYMPHOCYTE_COUNT.P+T.1e-06) |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Lymphocyte count | lymphocyte count | 5,729 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002557/ScoringFiles/PGS002557.txt.gz |
| PGS002606 (blood_LYMPHOCYTE_COUNT.P+T.5e-08) |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Lymphocyte count | lymphocyte count | 3,808 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002606/ScoringFiles/PGS002606.txt.gz |
| PGS002655 (blood_LYMPHOCYTE_COUNT.PolyFun-pred) |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Lymphocyte count | lymphocyte count | 472,203 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002655/ScoringFiles/PGS002655.txt.gz |
| PGS002704 (blood_LYMPHOCYTE_COUNT.SBayesR) |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Lymphocyte count | lymphocyte count | 983,350 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002704/ScoringFiles/PGS002704.txt.gz |
| PGS003475 (LDPred2_LYM) |
PGP000456 | Zhang Y et al. EBioMedicine (2022) |
Lymphocyte count | lymphocyte count | 859,875 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003475/ScoringFiles/PGS003475.txt.gz |
| PGS003557 (cont-decay-lymphocyte_perc) |
PGP000457 | Ding Y et al. Nature (2023) |
Lymphocyte percentage | lymphocyte percentage of leukocytes | 979,739 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003557/ScoringFiles/PGS003557.txt.gz |
| PGS003936 (INI30120) |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Lymphocyte count | lymphocyte count | 7,291 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003936/ScoringFiles/PGS003936.txt.gz |
| PGS003941 (INI30180) |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Lymphocyte percentage | lymphocyte percentage of leukocytes | 20,804 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003941/ScoringFiles/PGS003941.txt.gz |
| PGS004356 (X30120.score) |
PGP000561 | Jung H et al. Commun Biol (2024) |
Lymphocyte count | lymphocyte count | 1,059,939 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004356/ScoringFiles/PGS004356.txt.gz |
| PGS004359 (X30180.score) |
PGP000561 | Jung H et al. Commun Biol (2024) |
Lymphocyte percentage | lymphocyte percentage of leukocytes | 1,059,939 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004359/ScoringFiles/PGS004359.txt.gz |
| PGS005174 (VPGS_LYMPH) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Lymphocyte count variance | lymphocyte count | 9,501,646 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005174/ScoringFiles/PGS005174.txt.gz |
| PGS005184 (VPGS_LYMPH_P) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Lymphocyte percentage of white cells variance | lymphocyte percentage of leukocytes | 9,502,358 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005184/ScoringFiles/PGS005184.txt.gz |
|
PGS Performance Metric ID (PPM) |
Evaluated Score |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
|---|---|---|---|---|---|---|---|---|---|
| PPM000226 | PGS000097 (lymph) |
PSS000162| European Ancestry| 81,455 individuals |
PGP000051 | Xu Y et al. Cell Genom (2022) |
Reported Trait: Lymphocyte count | — | — | Pearson correlation coefficent (r): 0.40707 | age, sex, 10 PCs of ancestry, lifestyle factors (diet, smoking, alcohol consumption), technical covariates (the time between venepuncture and full blood cell analysis, seasonal effects, centre of sample collection, time dependent drift of equipment, systematic differences in equipment) | UKB Testing Set - these samples were held out from Score Development (regression training) but overlap with the samples used for variant selection (GWAS) |
| PPM000227 | PGS000097 (lymph) |
PSS000136| European Ancestry| 39,191 individuals |
PGP000051 | Xu Y et al. Cell Genom (2022) |
Reported Trait: Lymphocyte count | — | — | Pearson correlation coefficent (r): 0.4055 | age, sex, 10 PCs of ancestry, lifestyle factors (diet, smoking, alcohol consumption), technical covariates (the time between venepuncture and full blood cell analysis, seasonal effects, centre of sample collection, time dependent drift of equipment, systematic differences in equipment) | — |
| PPM000228 | PGS000098 (lymph_p) |
PSS000163| European Ancestry| 81,464 individuals |
PGP000051 | Xu Y et al. Cell Genom (2022) |
Reported Trait: Lymphocyte percentage of white cells | — | — | Pearson correlation coefficent (r): 0.33396 | age, sex, 10 PCs of ancestry, lifestyle factors (diet, smoking, alcohol consumption), technical covariates (the time between venepuncture and full blood cell analysis, seasonal effects, centre of sample collection, time dependent drift of equipment, systematic differences in equipment) | UKB Testing Set - these samples were held out from Score Development (regression training) but overlap with the samples used for variant selection (GWAS) |
| PPM000229 | PGS000098 (lymph_p) |
PSS000137| European Ancestry| 39,178 individuals |
PGP000051 | Xu Y et al. Cell Genom (2022) |
Reported Trait: Lymphocyte percentage of white cells | — | — | Pearson correlation coefficent (r): 0.3313 | age, sex, 10 PCs of ancestry, lifestyle factors (diet, smoking, alcohol consumption), technical covariates (the time between venepuncture and full blood cell analysis, seasonal effects, centre of sample collection, time dependent drift of equipment, systematic differences in equipment) | — |
| PPM000550 | PGS000172 (lymph) |
PSS000290| European Ancestry| 2,314 individuals |
PGP000078 | Vuckovic D et al. Cell (2020) |
Reported Trait: Lymphocyte count | — | — | R²: 0.03217 | sex, age, 10 genetic PCs | — |
| PPM000528 | PGS000172 (lymph) |
PSS000291| European Ancestry| 39,260 individuals |
PGP000078 | Vuckovic D et al. Cell (2020) |
Reported Trait: Lymphocyte count | — | — | R²: 0.10555 | sex, age, 10 genetic PCs | — |
| PPM039220 | PGS000172 (lymph) |
PSS013916| European Ancestry| 425,240 individuals |
PGP000865 | Bhatt IS et al. J Assoc Res Otolaryngol (2024) |Ext. |
Reported Trait: Age-related hearing difficulty | β: 0.00904 | — | — | — | — |
| PPM000529 | PGS000173 (lymph_p) |
PSS000291| European Ancestry| 39,260 individuals |
PGP000078 | Vuckovic D et al. Cell (2020) |
Reported Trait: Lymphocyte percentage of white cells | — | — | R²: 0.06965 | sex, age, 10 genetic PCs | — |
| PPM008616 | PGS001199 (GBE_INI30120) |
PSS006968| European Ancestry| 24,129 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: Lymphocyte count | — | — | R²: 0.04047 [0.03568, 0.04526] Incremental R2 (full-covars): 0.03437 PGS R2 (no covariates): 0.03502 [0.03053, 0.0395] |
age, sex, UKB array type, Genotype PCs | — |
| PPM008614 | PGS001199 (GBE_INI30120) |
PSS006966| African Ancestry| 6,120 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: Lymphocyte count | — | — | R²: 0.01509 [0.00921, 0.02097] Incremental R2 (full-covars): 0.0048 PGS R2 (no covariates): 0.00655 [0.00264, 0.01046] |
age, sex, UKB array type, Genotype PCs | — |
| PPM008615 | PGS001199 (GBE_INI30120) |
PSS006967| East Asian Ancestry| 1,654 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: Lymphocyte count | — | — | R²: 0.07751 [0.05317, 0.10185] Incremental R2 (full-covars): 0.02783 PGS R2 (no covariates): 0.0308 [0.01468, 0.04692] |
age, sex, UKB array type, Genotype PCs | — |
| PPM008617 | PGS001199 (GBE_INI30120) |
PSS006969| South Asian Ancestry| 7,491 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: Lymphocyte count | — | — | R²: 0.04041 [0.03187, 0.04896] Incremental R2 (full-covars): 0.02891 PGS R2 (no covariates): 0.02928 [0.02192, 0.03663] |
age, sex, UKB array type, Genotype PCs | — |
| PPM008618 | PGS001199 (GBE_INI30120) |
PSS006970| European Ancestry| 65,520 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: Lymphocyte count | — | — | R²: 0.02566 [0.0233, 0.02801] Incremental R2 (full-covars): 0.02051 PGS R2 (no covariates): 0.02072 [0.01859, 0.02285] |
age, sex, UKB array type, Genotype PCs | — |
| PPM038806 | PGS001199 (GBE_INI30120) |
PSS013916| European Ancestry| 425,240 individuals |
PGP000865 | Bhatt IS et al. J Assoc Res Otolaryngol (2024) |Ext. |
Reported Trait: Age-related hearing difficulty | β: 0.01657 | — | — | — | — |
| PPM007054 | PGS001414 (GBE_INI30180) |
PSS006995| European Ancestry| 65,520 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: Lymphocyte % | — | — | R²: 0.10838 [0.10395, 0.11281] Incremental R2 (full-covars): 0.08842 PGS R2 (no covariates): 0.08835 [0.08426, 0.09245] |
age, sex, UKB array type, Genotype PCs | — |
| PPM007050 | PGS001414 (GBE_INI30180) |
PSS006991| African Ancestry| 6,120 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: Lymphocyte % | — | — | R²: 0.03982 [0.03051, 0.04913] Incremental R2 (full-covars): 0.01769 PGS R2 (no covariates): 0.02018 [0.01341, 0.02694] |
age, sex, UKB array type, Genotype PCs | — |
| PPM007051 | PGS001414 (GBE_INI30180) |
PSS006992| East Asian Ancestry| 1,654 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: Lymphocyte % | — | — | R²: 0.08102 [0.05624, 0.10581] Incremental R2 (full-covars): 0.04011 PGS R2 (no covariates): 0.03886 [0.02091, 0.05682] |
age, sex, UKB array type, Genotype PCs | — |
| PPM007052 | PGS001414 (GBE_INI30180) |
PSS006993| European Ancestry| 24,130 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: Lymphocyte % | — | — | R²: 0.09934 [0.09229, 0.10639] Incremental R2 (full-covars): 0.08221 PGS R2 (no covariates): 0.084 [0.0774, 0.09059] |
age, sex, UKB array type, Genotype PCs | — |
| PPM007053 | PGS001414 (GBE_INI30180) |
PSS006994| South Asian Ancestry| 7,491 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: Lymphocyte % | — | — | R²: 0.05905 [0.04893, 0.06918] Incremental R2 (full-covars): 0.05259 PGS R2 (no covariates): 0.05171 [0.04216, 0.06126] |
age, sex, UKB array type, Genotype PCs | — |
| PPM010595 | PGS001965 (portability-PLR_log_lymphocyte) |
PSS009454| European Ancestry| 19,387 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte count | — | — | Partial Correlation (partial-r): 0.3636 [0.3514, 0.3758] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010596 | PGS001965 (portability-PLR_log_lymphocyte) |
PSS009228| European Ancestry| 3,993 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte count | — | — | Partial Correlation (partial-r): 0.3456 [0.3179, 0.3727] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010597 | PGS001965 (portability-PLR_log_lymphocyte) |
PSS008782| European Ancestry| 6,421 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte count | — | — | Partial Correlation (partial-r): 0.3335 [0.3115, 0.3551] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010598 | PGS001965 (portability-PLR_log_lymphocyte) |
PSS008556| Greater Middle Eastern Ancestry| 1,150 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte count | — | — | Partial Correlation (partial-r): 0.3153 [0.2618, 0.3669] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010599 | PGS001965 (portability-PLR_log_lymphocyte) |
PSS008334| South Asian Ancestry| 6,058 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte count | — | — | Partial Correlation (partial-r): 0.301 [0.2779, 0.3238] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010600 | PGS001965 (portability-PLR_log_lymphocyte) |
PSS008111| East Asian Ancestry| 1,761 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte count | — | — | Partial Correlation (partial-r): 0.2717 [0.2277, 0.3147] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010602 | PGS001965 (portability-PLR_log_lymphocyte) |
PSS009002| African Ancestry| 3,699 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte count | — | — | Partial Correlation (partial-r): 0.1702 [0.1386, 0.2014] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010601 | PGS001965 (portability-PLR_log_lymphocyte) |
PSS007898| African Ancestry| 2,337 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte count | — | — | Partial Correlation (partial-r): 0.167 [0.1271, 0.2063] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM038689 | PGS001965 (portability-PLR_log_lymphocyte) |
PSS013916| European Ancestry| 425,240 individuals |
PGP000865 | Bhatt IS et al. J Assoc Res Otolaryngol (2024) |Ext. |
Reported Trait: Age-related hearing difficulty | β: 0.02126 | — | — | — | — |
| PPM010763 | PGS001986 (portability-PLR_lymphocyte_perc) |
PSS009473| European Ancestry| 19,383 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte percentage | — | — | Partial Correlation (partial-r): 0.314 [0.3012, 0.3266] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010764 | PGS001986 (portability-PLR_lymphocyte_perc) |
PSS009247| European Ancestry| 3,992 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte percentage | — | — | Partial Correlation (partial-r): 0.2972 [0.2686, 0.3253] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010765 | PGS001986 (portability-PLR_lymphocyte_perc) |
PSS008801| European Ancestry| 6,417 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte percentage | — | — | Partial Correlation (partial-r): 0.3022 [0.2798, 0.3243] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010766 | PGS001986 (portability-PLR_lymphocyte_perc) |
PSS008575| Greater Middle Eastern Ancestry| 1,150 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte percentage | — | — | Partial Correlation (partial-r): 0.2825 [0.228, 0.3353] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010767 | PGS001986 (portability-PLR_lymphocyte_perc) |
PSS008353| South Asian Ancestry| 6,056 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte percentage | — | — | Partial Correlation (partial-r): 0.2722 [0.2487, 0.2954] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010768 | PGS001986 (portability-PLR_lymphocyte_perc) |
PSS008130| East Asian Ancestry| 1,761 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte percentage | — | — | Partial Correlation (partial-r): 0.2475 [0.2028, 0.291] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010769 | PGS001986 (portability-PLR_lymphocyte_perc) |
PSS007917| African Ancestry| 2,337 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte percentage | — | — | Partial Correlation (partial-r): 0.1708 [0.131, 0.21] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010770 | PGS001986 (portability-PLR_lymphocyte_perc) |
PSS009021| African Ancestry| 3,695 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte percentage | — | — | Partial Correlation (partial-r): 0.1726 [0.1411, 0.2038] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012311 | PGS002183 (portability-ldpred2_log_lymphocyte) |
PSS009454| European Ancestry| 19,387 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte count | — | — | Partial Correlation (partial-r): 0.3574 [0.3451, 0.3697] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012312 | PGS002183 (portability-ldpred2_log_lymphocyte) |
PSS009228| European Ancestry| 3,993 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte count | — | — | Partial Correlation (partial-r): 0.3369 [0.3091, 0.3642] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012314 | PGS002183 (portability-ldpred2_log_lymphocyte) |
PSS008556| Greater Middle Eastern Ancestry| 1,150 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte count | — | — | Partial Correlation (partial-r): 0.2968 [0.2427, 0.3491] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012315 | PGS002183 (portability-ldpred2_log_lymphocyte) |
PSS008334| South Asian Ancestry| 6,058 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte count | — | — | Partial Correlation (partial-r): 0.2945 [0.2713, 0.3173] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012316 | PGS002183 (portability-ldpred2_log_lymphocyte) |
PSS008111| East Asian Ancestry| 1,761 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte count | — | — | Partial Correlation (partial-r): 0.2745 [0.2305, 0.3174] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012317 | PGS002183 (portability-ldpred2_log_lymphocyte) |
PSS007898| African Ancestry| 2,337 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte count | — | — | Partial Correlation (partial-r): 0.1609 [0.121, 0.2003] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012318 | PGS002183 (portability-ldpred2_log_lymphocyte) |
PSS009002| African Ancestry| 3,699 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte count | — | — | Partial Correlation (partial-r): 0.1618 [0.1302, 0.1931] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012313 | PGS002183 (portability-ldpred2_log_lymphocyte) |
PSS008782| European Ancestry| 6,421 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte count | — | — | Partial Correlation (partial-r): 0.3319 [0.31, 0.3536] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM038756 | PGS002183 (portability-ldpred2_log_lymphocyte) |
PSS013916| European Ancestry| 425,240 individuals |
PGP000865 | Bhatt IS et al. J Assoc Res Otolaryngol (2024) |Ext. |
Reported Trait: Age-related hearing difficulty | β: 0.01808 | — | — | — | — |
| PPM012471 | PGS002203 (portability-ldpred2_lymphocyte_perc) |
PSS009473| European Ancestry| 19,383 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte percentage | — | — | Partial Correlation (partial-r): 0.3116 [0.2989, 0.3243] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012472 | PGS002203 (portability-ldpred2_lymphocyte_perc) |
PSS009247| European Ancestry| 3,992 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte percentage | — | — | Partial Correlation (partial-r): 0.2932 [0.2645, 0.3213] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012473 | PGS002203 (portability-ldpred2_lymphocyte_perc) |
PSS008801| European Ancestry| 6,417 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte percentage | — | — | Partial Correlation (partial-r): 0.2976 [0.2751, 0.3198] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012474 | PGS002203 (portability-ldpred2_lymphocyte_perc) |
PSS008575| Greater Middle Eastern Ancestry| 1,150 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte percentage | — | — | Partial Correlation (partial-r): 0.2842 [0.2297, 0.3369] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012475 | PGS002203 (portability-ldpred2_lymphocyte_perc) |
PSS008353| South Asian Ancestry| 6,056 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte percentage | — | — | Partial Correlation (partial-r): 0.2664 [0.2428, 0.2897] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012476 | PGS002203 (portability-ldpred2_lymphocyte_perc) |
PSS008130| East Asian Ancestry| 1,761 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte percentage | — | — | Partial Correlation (partial-r): 0.2567 [0.2122, 0.3] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012477 | PGS002203 (portability-ldpred2_lymphocyte_perc) |
PSS007917| African Ancestry| 2,337 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte percentage | — | — | Partial Correlation (partial-r): 0.1725 [0.1327, 0.2117] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012478 | PGS002203 (portability-ldpred2_lymphocyte_perc) |
PSS009021| African Ancestry| 3,695 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Lymphocyte percentage | — | — | Partial Correlation (partial-r): 0.164 [0.1324, 0.1953] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM013103 | PGS002338 (blood_LYMPHOCYTE_COUNT.BOLT-LMM) |
PSS009795| African Ancestry| 6,135 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0305 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013152 | PGS002338 (blood_LYMPHOCYTE_COUNT.BOLT-LMM) |
PSS009796| East Asian Ancestry| 895 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0585 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013201 | PGS002338 (blood_LYMPHOCYTE_COUNT.BOLT-LMM) |
PSS009797| European Ancestry| 41,973 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.1307 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013250 | PGS002338 (blood_LYMPHOCYTE_COUNT.BOLT-LMM) |
PSS009798| South Asian Ancestry| 7,737 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0755 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM038670 | PGS002338 (blood_LYMPHOCYTE_COUNT.BOLT-LMM) |
PSS013916| European Ancestry| 425,240 individuals |
PGP000865 | Bhatt IS et al. J Assoc Res Otolaryngol (2024) |Ext. |
Reported Trait: Age-related hearing difficulty | β: 0.02224 | — | — | — | — |
| PPM013351 | PGS002370 (blood_LYMPHOCYTE_COUNT.BOLT-LMM-BBJ) |
PSS009798| South Asian Ancestry| 7,737 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0045 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013282 | PGS002370 (blood_LYMPHOCYTE_COUNT.BOLT-LMM-BBJ) |
PSS009795| African Ancestry| 6,135 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0008 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013328 | PGS002370 (blood_LYMPHOCYTE_COUNT.BOLT-LMM-BBJ) |
PSS009797| European Ancestry| 41,973 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0034 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013305 | PGS002370 (blood_LYMPHOCYTE_COUNT.BOLT-LMM-BBJ) |
PSS009796| East Asian Ancestry| 895 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0363 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013391 | PGS002410 (blood_LYMPHOCYTE_COUNT.P+T.0.0001) |
PSS009795| African Ancestry| 6,135 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0004 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013440 | PGS002410 (blood_LYMPHOCYTE_COUNT.P+T.0.0001) |
PSS009796| East Asian Ancestry| 895 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0566 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013489 | PGS002410 (blood_LYMPHOCYTE_COUNT.P+T.0.0001) |
PSS009797| European Ancestry| 41,973 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0706 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013538 | PGS002410 (blood_LYMPHOCYTE_COUNT.P+T.0.0001) |
PSS009798| South Asian Ancestry| 7,737 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0387 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM039157 | PGS002410 (blood_LYMPHOCYTE_COUNT.P+T.0.0001) |
PSS013916| European Ancestry| 425,240 individuals |
PGP000865 | Bhatt IS et al. J Assoc Res Otolaryngol (2024) |Ext. |
Reported Trait: Age-related hearing difficulty | β: 0.01037 | — | — | — | — |
| PPM013587 | PGS002459 (blood_LYMPHOCYTE_COUNT.P+T.0.001) |
PSS009795| African Ancestry| 6,135 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0003 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013636 | PGS002459 (blood_LYMPHOCYTE_COUNT.P+T.0.001) |
PSS009796| East Asian Ancestry| 895 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0358 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013685 | PGS002459 (blood_LYMPHOCYTE_COUNT.P+T.0.001) |
PSS009797| European Ancestry| 41,973 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.058 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013734 | PGS002459 (blood_LYMPHOCYTE_COUNT.P+T.0.001) |
PSS009798| South Asian Ancestry| 7,737 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0294 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM039155 | PGS002459 (blood_LYMPHOCYTE_COUNT.P+T.0.001) |
PSS013916| European Ancestry| 425,240 individuals |
PGP000865 | Bhatt IS et al. J Assoc Res Otolaryngol (2024) |Ext. |
Reported Trait: Age-related hearing difficulty | β: 0.02163 | — | — | — | — |
| PPM013881 | PGS002508 (blood_LYMPHOCYTE_COUNT.P+T.0.01) |
PSS009797| European Ancestry| 41,973 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0456 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013783 | PGS002508 (blood_LYMPHOCYTE_COUNT.P+T.0.01) |
PSS009795| African Ancestry| 6,135 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013832 | PGS002508 (blood_LYMPHOCYTE_COUNT.P+T.0.01) |
PSS009796| East Asian Ancestry| 895 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0123 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013930 | PGS002508 (blood_LYMPHOCYTE_COUNT.P+T.0.01) |
PSS009798| South Asian Ancestry| 7,737 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0138 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM038815 | PGS002508 (blood_LYMPHOCYTE_COUNT.P+T.0.01) |
PSS013916| European Ancestry| 425,240 individuals |
PGP000865 | Bhatt IS et al. J Assoc Res Otolaryngol (2024) |Ext. |
Reported Trait: Age-related hearing difficulty | β: 0.0482 | — | — | — | — |
| PPM013979 | PGS002557 (blood_LYMPHOCYTE_COUNT.P+T.1e-06) |
PSS009795| African Ancestry| 6,135 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0087 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM014028 | PGS002557 (blood_LYMPHOCYTE_COUNT.P+T.1e-06) |
PSS009796| East Asian Ancestry| 895 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.057 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM014077 | PGS002557 (blood_LYMPHOCYTE_COUNT.P+T.1e-06) |
PSS009797| European Ancestry| 41,973 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0561 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM014126 | PGS002557 (blood_LYMPHOCYTE_COUNT.P+T.1e-06) |
PSS009798| South Asian Ancestry| 7,737 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0302 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM039171 | PGS002557 (blood_LYMPHOCYTE_COUNT.P+T.1e-06) |
PSS013916| European Ancestry| 425,240 individuals |
PGP000865 | Bhatt IS et al. J Assoc Res Otolaryngol (2024) |Ext. |
Reported Trait: Age-related hearing difficulty | β: 0.00959 | — | — | — | — |
| PPM014175 | PGS002606 (blood_LYMPHOCYTE_COUNT.P+T.5e-08) |
PSS009795| African Ancestry| 6,135 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0085 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM014224 | PGS002606 (blood_LYMPHOCYTE_COUNT.P+T.5e-08) |
PSS009796| East Asian Ancestry| 895 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0542 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM014273 | PGS002606 (blood_LYMPHOCYTE_COUNT.P+T.5e-08) |
PSS009797| European Ancestry| 41,973 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0498 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM014322 | PGS002606 (blood_LYMPHOCYTE_COUNT.P+T.5e-08) |
PSS009798| South Asian Ancestry| 7,737 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0265 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM039109 | PGS002606 (blood_LYMPHOCYTE_COUNT.P+T.5e-08) |
PSS013916| European Ancestry| 425,240 individuals |
PGP000865 | Bhatt IS et al. J Assoc Res Otolaryngol (2024) |Ext. |
Reported Trait: Age-related hearing difficulty | β: 0.01044 | — | — | — | — |
| PPM014371 | PGS002655 (blood_LYMPHOCYTE_COUNT.PolyFun-pred) |
PSS009795| African Ancestry| 6,135 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model when combined with BOLT-LMM vs. covariates alone): 0.0339 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | See blood_LYMPHOCYTE_COUNT.mixweights file at http://data.broadinstitute.org/alkesgroup/polypred_results for combination weights |
| PPM014420 | PGS002655 (blood_LYMPHOCYTE_COUNT.PolyFun-pred) |
PSS009796| East Asian Ancestry| 895 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model when combined with BOLT-LMM vs. covariates alone): 0.0735 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | See blood_LYMPHOCYTE_COUNT.mixweights file at http://data.broadinstitute.org/alkesgroup/polypred_results for combination weights |
| PPM014469 | PGS002655 (blood_LYMPHOCYTE_COUNT.PolyFun-pred) |
PSS009797| European Ancestry| 41,973 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model when combined with BOLT-LMM vs. covariates alone): 0.1393 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | See blood_LYMPHOCYTE_COUNT.mixweights file at http://data.broadinstitute.org/alkesgroup/polypred_results for combination weights |
| PPM014518 | PGS002655 (blood_LYMPHOCYTE_COUNT.PolyFun-pred) |
PSS009798| South Asian Ancestry| 7,737 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model when combined with BOLT-LMM vs. covariates alone): 0.0834 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | See blood_LYMPHOCYTE_COUNT.mixweights file at http://data.broadinstitute.org/alkesgroup/polypred_results for combination weights |
| PPM039142 | PGS002655 (blood_LYMPHOCYTE_COUNT.PolyFun-pred) |
PSS013916| European Ancestry| 425,240 individuals |
PGP000865 | Bhatt IS et al. J Assoc Res Otolaryngol (2024) |Ext. |
Reported Trait: Age-related hearing difficulty | β: 0.01004 | — | — | — | — |
| PPM014616 | PGS002704 (blood_LYMPHOCYTE_COUNT.SBayesR) |
PSS009796| East Asian Ancestry| 895 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0673 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM014567 | PGS002704 (blood_LYMPHOCYTE_COUNT.SBayesR) |
PSS009795| African Ancestry| 6,135 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0268 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM014665 | PGS002704 (blood_LYMPHOCYTE_COUNT.SBayesR) |
PSS009797| European Ancestry| 41,973 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.1222 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM014714 | PGS002704 (blood_LYMPHOCYTE_COUNT.SBayesR) |
PSS009798| South Asian Ancestry| 7,737 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Lymphocyte Count | — | — | Incremental R2 (full model vs. covariates alone): 0.0722 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM038746 | PGS002704 (blood_LYMPHOCYTE_COUNT.SBayesR) |
PSS013916| European Ancestry| 425,240 individuals |
PGP000865 | Bhatt IS et al. J Assoc Res Otolaryngol (2024) |Ext. |
Reported Trait: Age-related hearing difficulty | β: 0.01869 | — | — | — | — |
| PPM017285 | PGS003475 (LDPred2_LYM) |
PSS010185| Hispanic or Latin American Ancestry| 1,115 individuals |
PGP000456 | Zhang Y et al. EBioMedicine (2022) |
Reported Trait: Respiratory event index | β: 0.009 (0.01) | — | — | Age, sex, center, 5 genetic PCs, Hispanic/Latino background, BMI | — |
| PPM017308 | PGS003475 (LDPred2_LYM) |
PSS010185| Hispanic or Latin American Ancestry| 1,115 individuals |
PGP000456 | Zhang Y et al. EBioMedicine (2022) |
Reported Trait: Obstructive sleep apnea | β: 0.007 (0.024) | — | — | Age, sex, center, 5 genetic PCs, Hispanic/Latino background, BMI | — |
| PPM017485 | PGS003557 (cont-decay-lymphocyte_perc) |
PSS010923| European Ancestry| 19,370 individuals |
PGP000457 | Ding Y et al. Nature (2023) |
Reported Trait: Lymphocyte percentage | — | — | partial-R2: 0.1 | sex, age, deprivation index, PC1-16 | — |
| PPM017569 | PGS003557 (cont-decay-lymphocyte_perc) |
PSS010839| European Ancestry| 3,981 individuals |
PGP000457 | Ding Y et al. Nature (2023) |
Reported Trait: Lymphocyte percentage | — | — | partial-R2: 0.08 | sex, age, deprivation index, PC1-16 | — |
| PPM017737 | PGS003557 (cont-decay-lymphocyte_perc) |
PSS010587| Greater Middle Eastern Ancestry| 1,120 individuals |
PGP000457 | Ding Y et al. Nature (2023) |
Reported Trait: Lymphocyte percentage | — | — | partial-R2: 0.08 | sex, age, deprivation index, PC1-16 | — |
| PPM017821 | PGS003557 (cont-decay-lymphocyte_perc) |
PSS010251| European Ancestry| 2,258 individuals |
PGP000457 | Ding Y et al. Nature (2023) |
Reported Trait: Lymphocyte percentage | — | — | partial-R2: 0.09 | sex, age, deprivation index, PC1-16 | — |
| PPM017905 | PGS003557 (cont-decay-lymphocyte_perc) |
PSS010503| South Asian Ancestry| 6,004 individuals |
PGP000457 | Ding Y et al. Nature (2023) |
Reported Trait: Lymphocyte percentage | — | — | partial-R2: 0.07 | sex, age, deprivation index, PC1-16 | — |
| PPM017989 | PGS003557 (cont-decay-lymphocyte_perc) |
PSS010419| East Asian Ancestry| 1,749 individuals |
PGP000457 | Ding Y et al. Nature (2023) |
Reported Trait: Lymphocyte percentage | — | — | partial-R2: 0.07 | sex, age, deprivation index, PC1-16 | — |
| PPM018073 | PGS003557 (cont-decay-lymphocyte_perc) |
PSS010335| African Ancestry| 2,324 individuals |
PGP000457 | Ding Y et al. Nature (2023) |
Reported Trait: Lymphocyte percentage | — | — | partial-R2: 0.03 | sex, age, deprivation index, PC1-16 | — |
| PPM018157 | PGS003557 (cont-decay-lymphocyte_perc) |
PSS010755| African Ancestry| 3,666 individuals |
PGP000457 | Ding Y et al. Nature (2023) |
Reported Trait: Lymphocyte percentage | — | — | partial-R2: 0.02 | sex, age, deprivation index, PC1-16 | — |
| PPM017653 | PGS003557 (cont-decay-lymphocyte_perc) |
PSS010671| European Ancestry| 6,258 individuals |
PGP000457 | Ding Y et al. Nature (2023) |
Reported Trait: Lymphocyte percentage | — | — | partial-R2: 0.09 | sex, age, deprivation index, PC1-16 | — |
| PPM018999 | PGS003936 (INI30120) |
PSS011139| European Ancestry| 65,814 individuals |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Reported Trait: Lymphocyte count | — | — | R²: 0.02749 [0.02507, 0.02992] PGS R2 (no covariates): 0.02217 [0.01997, 0.02436] Incremental R2 (full-covars): 0.02189 |
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) | — |
| PPM019000 | PGS003936 (INI30120) |
PSS011110| European Ancestry| 2,810 individuals |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Reported Trait: Lymphocyte count | — | — | R²: 0.03382 [0.02089, 0.04675] PGS R2 (no covariates): 0.02699 [0.01535, 0.03862] Incremental R2 (full-covars): 0.02644 |
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) | — |
| PPM019001 | PGS003936 (INI30120) |
PSS011112| South Asian Ancestry| 1,428 individuals |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Reported Trait: Lymphocyte count | — | — | R²: 0.05901 [0.03583, 0.08219] PGS R2 (no covariates): 0.04232 [0.02234, 0.0623] Incremental R2 (full-covars): 0.03929 |
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) | — |
| PPM019002 | PGS003936 (INI30120) |
PSS011154| African Ancestry| 1,154 individuals |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Reported Trait: Lymphocyte count | — | — | R²: 0.01861 [0.00358, 0.03363] PGS R2 (no covariates): 0.00551 [-0.00278, 0.01379] Incremental R2 (full-covars): -0.00495 |
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) | — |
| PPM019003 | PGS003936 (INI30120) |
PSS011168| Multi-ancestry (excluding European)| 7,732 individuals |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Reported Trait: Lymphocyte count | — | — | R²: 0.04696 [0.03792, 0.05601] PGS R2 (no covariates): 0.02897 [0.02173, 0.0362] Incremental R2 (full-covars): 0.02614 |
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) | — |
| PPM019024 | PGS003941 (INI30180) |
PSS011139| European Ancestry| 65,814 individuals |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Reported Trait: Lymphocyte percentage | — | — | R²: 0.12323 [0.1186, 0.12787] PGS R2 (no covariates): 0.09003 [0.08592, 0.09414] Incremental R2 (full-covars): 0.09003 |
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) | — |
| PPM019025 | PGS003941 (INI30180) |
PSS011110| European Ancestry| 2,810 individuals |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Reported Trait: Lymphocyte percentage | — | — | R²: 0.11201 [0.09038, 0.13364] PGS R2 (no covariates): 0.08186 [0.06274, 0.10098] Incremental R2 (full-covars): 0.08335 |
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) | — |
| PPM019026 | PGS003941 (INI30180) |
PSS011112| South Asian Ancestry| 1,428 individuals |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Reported Trait: Lymphocyte percentage | — | — | R²: 0.07411 [0.04855, 0.09967] PGS R2 (no covariates): 0.05351 [0.03131, 0.07571] Incremental R2 (full-covars): 0.05293 |
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) | — |
| PPM019027 | PGS003941 (INI30180) |
PSS011154| African Ancestry| 1,154 individuals |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Reported Trait: Lymphocyte percentage | — | — | R²: 0.06881 [0.0414, 0.09623] PGS R2 (no covariates): 0.0468 [0.02366, 0.06995] Incremental R2 (full-covars): 0.04285 |
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) | — |
| PPM019028 | PGS003941 (INI30180) |
PSS011168| Multi-ancestry (excluding European)| 7,732 individuals |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Reported Trait: Lymphocyte percentage | — | — | R²: 0.15346 [0.13894, 0.16798] PGS R2 (no covariates): 0.11132 [0.09834, 0.12431] Incremental R2 (full-covars): 0.07958 |
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) | — |
| PPM020471 | PGS004356 (X30120.score) |
PSS011364| European Ancestry| 56,192 individuals |
PGP000561 | Jung H et al. Commun Biol (2024) |
Reported Trait: Lymphocyte count | — | — | PGS R2 (no covariates): 0.25007 | — | — |
| PPM020474 | PGS004359 (X30180.score) |
PSS011364| European Ancestry| 56,192 individuals |
PGP000561 | Jung H et al. Commun Biol (2024) |
Reported Trait: Lymphocyte percentage | — | — | PGS R2 (no covariates): 0.22005 | — | — |
| PPM022548 | PGS005174 (VPGS_LYMPH) |
PSS011995| European Ancestry| 39,191 individuals |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Reported Trait: Lymphocyte_count | β: -0.00133 | — | R²: 0.16298 | — | effects of PGS*vPGS tested and shown in Supplementary Data 12) |
| PPM022554 | PGS005184 (VPGS_LYMPH_P) |
PSS011996| European Ancestry| 39,178 individuals |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Reported Trait: Lymphocyte_percentage_of_white_cells | β: -0.00051 | — | R²: 0.10833 | — | effects of PGS*vPGS tested and shown in Supplementary Data 12) |
|
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
|---|---|---|---|---|---|---|---|---|
| PSS008782 | — | — | 6,421 individuals | — | European | Italy (South Europe) | UKB | — |
| PSS010923 | — | — | 19,370 individuals, 46.0 % Male samples |
Mean = 56.9 years Sd = 7.9 years |
European | white British | UKB | — |
| PSS011154 | — | — | 1,154 individuals | — | African unspecified | — | UKB | — |
| PSS010671 | — | — | 6,258 individuals, 45.0 % Male samples |
Mean = 54.5 years Sd = 8.4 years |
European | Italian | UKB | — |
| PSS006991 | — | — | 6,120 individuals | — | African unspecified | — | UKB | — |
| PSS006992 | — | — | 1,654 individuals | — | East Asian | — | UKB | — |
| PSS006993 | — | — | 24,130 individuals | — | European | non-white British ancestry | UKB | — |
| PSS006994 | — | — | 7,491 individuals | — | South Asian | — | UKB | — |
| PSS006995 | — | — | 65,520 individuals | — | European | white British ancestry | UKB | Testing cohort (heldout set) |
| PSS007898 | — | — | 2,337 individuals | — | African American or Afro-Caribbean | Carribean | UKB | — |
| PSS008130 | — | — | 1,761 individuals | — | East Asian | China (East Asia) | UKB | — |
| PSS010419 | — | — | 1,749 individuals, 33.0 % Male samples |
Mean = 52.5 years Sd = 7.8 years |
East Asian | Chinese | UKB | — |
| PSS011995 | — | — | 39,191 individuals | — | European (British) |
— | INTERVAL | — |
| PSS011168 | — | — | 7,732 individuals | — | East Asian, Other admixed ancestry | East Asian, Other admixed ancestry | UKB | — |
| PSS008801 | — | — | 6,417 individuals | — | European | Italy (South Europe) | UKB | — |
| PSS011996 | — | — | 39,178 individuals | — | European (British) |
— | INTERVAL | — |
| PSS000290 | — | — | 2,314 individuals | — | European (French Canadian) |
— | CARTaGENE | — |
| PSS000291 | — | — | 39,260 individuals | — | European | — | INTERVAL | — |
| PSS008556 | — | — | 1,150 individuals | — | Greater Middle Eastern (Middle Eastern, North African or Persian) | Iran (Middle East) | UKB | — |
| PSS007917 | — | — | 2,337 individuals | — | African American or Afro-Caribbean | Carribean | UKB | — |
| PSS009454 | — | — | 19,387 individuals | — | European | UK (+ Ireland) | UKB | — |
| PSS013916 | — | — | [ ,
46.21 % Male samples |
— | European (British, Irish) |
— | UKB | — |
| PSS010185 | — | — | 1,115 individuals, 41.1 % Male samples |
Mean = 46.18 years | Hispanic or Latin American | — | HCHS-SOL | — |
| PSS009795 | — | — | 6,135 individuals | — | African unspecified | — | UKB | — |
| PSS009796 | — | — | 895 individuals | — | East Asian | — | UKB | — |
| PSS009797 | — | — | 41,973 individuals | — | European | Non-British European | UKB | — |
| PSS009798 | — | — | 7,737 individuals | — | South Asian | — | UKB | — |
| PSS008575 | — | — | 1,150 individuals | — | Greater Middle Eastern (Middle Eastern, North African or Persian) | Iran (Middle East) | UKB | — |
| PSS010839 | — | — | 3,981 individuals, 38.0 % Male samples |
Mean = 54.3 years Sd = 7.5 years |
European | Polish | UKB | — |
| PSS009473 | — | — | 19,383 individuals | — | European | UK (+ Ireland) | UKB | — |
| PSS010587 | — | — | 1,120 individuals, 59.0 % Male samples |
Mean = 52.0 years Sd = 8.0 years |
Greater Middle Eastern (Middle Eastern, North African or Persian) | Iranian | UKB | — |
| PSS010335 | — | — | 2,324 individuals, 36.0 % Male samples |
Mean = 52.4 years Sd = 8.0 years |
African American or Afro-Caribbean | Caribbean | UKB | — |
| PSS000136 | — | — | 39,191 individuals, 50.0 % Male samples |
Mean = 43.82 years Range = [18.0, 76.4] years |
European | — | INTERVAL | — |
| PSS000137 | — | — | 39,178 individuals, 50.0 % Male samples |
Mean = 43.82 years Range = [18.0, 76.4] years |
European | — | INTERVAL | — |
| PSS009228 | — | — | 3,993 individuals | — | European | Poland (NE Europe) | UKB | — |
| PSS008334 | — | — | 6,058 individuals | — | South Asian | India (South Asia) | UKB | — |
| PSS009247 | — | — | 3,992 individuals | — | European | Poland (NE Europe) | UKB | — |
| PSS011364 | — | — | 56,192 individuals | — | European | — | UKB | — |
| PSS008353 | — | — | 6,056 individuals | — | South Asian | India (South Asia) | UKB | — |
| PSS000162 | — | — | 81,455 individuals, 45.0 % Male samples |
Mean = 57.23 years Range = [40.05, 71.07] years |
European | — | UKB | — |
| PSS000163 | — | — | 81,464 individuals, 46.0 % Male samples |
Mean = 57.22 years Range = [40.17, 71.1] years |
European | — | UKB | — |
| PSS011110 | — | — | 2,810 individuals | — | European (non-white British ancestry) |
— | UKB | — |
| PSS011112 | — | — | 1,428 individuals | — | South Asian | — | UKB | — |
| PSS010755 | — | — | 3,666 individuals, 47.0 % Male samples |
Mean = 51.9 years Sd = 8.1 years |
African unspecified | Nigerian | UKB | — |
| PSS009002 | — | — | 3,699 individuals | — | African unspecified | Nigeria (West Africa) | UKB | — |
| PSS010503 | — | — | 6,004 individuals, 55.0 % Male samples |
Mean = 53.3 years Sd = 8.4 years |
South Asian | Indian | UKB | — |
| PSS008111 | — | — | 1,761 individuals | — | East Asian | China (East Asia) | UKB | — |
| PSS010251 | — | — | 2,258 individuals, 45.0 % Male samples |
Mean = 58.0 years Sd = 7.1 years |
European | Ashkenazi | UKB | — |
| PSS009021 | — | — | 3,695 individuals | — | African unspecified | Nigeria (West Africa) | UKB | — |
| PSS006966 | — | — | 6,120 individuals | — | African unspecified | — | UKB | — |
| PSS006967 | — | — | 1,654 individuals | — | East Asian | — | UKB | — |
| PSS006968 | — | — | 24,129 individuals | — | European | non-white British ancestry | UKB | — |
| PSS006969 | — | — | 7,491 individuals | — | South Asian | — | UKB | — |
| PSS006970 | — | — | 65,520 individuals | — | European | white British ancestry | UKB | Testing cohort (heldout set) |
| PSS011139 | — | — | 65,814 individuals | — | European (white British ancestry) |
— | UKB | — |