|
PGS Publication/Study ID (PGP) |
PGS Developed |
PGS Evaluated |
First Author | Title | Journal Name |
Publication Date |
Digital object identifier (doi) |
PubMed ID (PMID) |
|---|---|---|---|---|---|---|---|---|
| PGP000725 | 0 | 2 | Busch AS | Polygenic Scores for Adult Testosterone and SHBG Levels Are Associated With Reproductive Hormone Levels in Male Infants. | J Clin Endocrinol Metab | 01/08/2024 | 10.1210/clinem/dgae104 | 38412310 |
| PGP000726 | 1 | 1 | Benafif S | The BARCODE1 Pilot: a feasibility study of using germline single nucleotide polymorphisms to target prostate cancer screening. | BJU Int | 15/08/2021 | 10.1111/bju.15535 | 34214236 |
| PGP000727 | 0 | 1 | Mars N | Comprehensive Inherited Risk Estimation for Risk-Based Breast Cancer Screening in Women. | J Clin Oncol | 29/02/2024 | 10.1200/jco.23.00295 | 38422475 |
| PGP000729 | 4 | 5 | Gibson TM | Polygenic risk scores, radiation treatment exposures and subsequent cancer risk in childhood cancer survivors. | Nat Med | 07/03/2024 | 10.1038/s41591-024-02837-7 | 38454124 |
| PGP000730 | 0 | 1 | McHugh JK | Assessment of a Polygenic Risk Score in Screening for Prostate Cancer. | N Engl J Med | 01/04/2025 | 10.1056/nejmoa2407934 | 40214032 |
| PGP000731 | 6 | 6 | Deng WQ | A high-resolution PheWAS approach to alcohol-related polygenic risk scores reveals mechanistic influences of alcohol reinforcing value and drinking motives. | Alcohol Alcohol | 01/01/2024 | 10.1093/alcalc/agad093 | 38261344 |
| PGP000728 | 1 | 1 | Prijatelj V | Bone health index in the assessment of bone health: The Generation R Study. | Bone | 07/03/2024 | 10.1016/j.bone.2024.117070 | 38460828 |
| PGP000723 | 26 | 26 | Xiang R | Genome-wide analyses of variance in blood cell phenotypes provide new insights into complex trait biology and prediction. | Nat Commun | 07/05/2025 | 10.1038/s41467-025-59525-4 | 40335489 |
| Polygenic Score ID & Name | PGS Publication ID (PGP) | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants |
Ancestry distribution GWAS Dev Eval |
Scoring File (FTP Link) |
|---|---|---|---|---|---|---|
| PGS005172 (VPGS_IRF) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Immature fraction of reticulocytes variance | reticulocyte amount | 9,469,602 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005172/ScoringFiles/PGS005172.txt.gz |
| PGS005173 (VPGS_PCT) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Plateletcrit variance | platelet crit | 9,451,377 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005173/ScoringFiles/PGS005173.txt.gz |
| PGS005174 (VPGS_LYMPH) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Lymphocyte count variance | lymphocyte count | 9,501,646 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005174/ScoringFiles/PGS005174.txt.gz |
| PGS005175 (VPGS_BASO) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Basophil count variance | basophil count | 9,437,557 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005175/ScoringFiles/PGS005175.txt.gz |
| PGS005176 (VPGS_RET) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Reticulocyte count variance | reticulocyte count | 9,469,884 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005176/ScoringFiles/PGS005176.txt.gz |
| PGS005177 (VPGS_HCT) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Hematocrit variance | hematocrit | 9,502,208 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005177/ScoringFiles/PGS005177.txt.gz |
| PGS005178 (VPGS_HGB) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Hemoglobin concentration variance | hemoglobin measurement | 9,500,975 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005178/ScoringFiles/PGS005178.txt.gz |
| PGS005179 (VPGS_HLR) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
High light scatter reticulocyte count variance | reticulocyte count | 9,481,520 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005179/ScoringFiles/PGS005179.txt.gz |
| PGS005180 (VPGS_HLR_P) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
High light scatter reticulocyte percentage of red cells variance | reticulocyte amount | 9,481,225 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005180/ScoringFiles/PGS005180.txt.gz |
| PGS005181 (VPGS_BASO_P) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Basophil percentage of white cells variance | basophil percentage of leukocytes | 9,493,222 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005181/ScoringFiles/PGS005181.txt.gz |
| PGS005182 (VPGS_EO) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Eosinophil count variance | eosinophil count | 8,862,968 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005182/ScoringFiles/PGS005182.txt.gz |
| PGS005183 (VPGS_EO_P) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Eosinophil percentage of white cells variance | eosinophil percentage of leukocytes | 9,498,015 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005183/ScoringFiles/PGS005183.txt.gz |
| PGS005184 (VPGS_LYMPH_P) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Lymphocyte percentage of white cells variance | lymphocyte percentage of leukocytes | 9,502,358 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005184/ScoringFiles/PGS005184.txt.gz |
| PGS005185 (VPGS_MCHC) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Mean corpuscular hemoglobin concentration variance | mean corpuscular hemoglobin concentration | 9,502,181 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005185/ScoringFiles/PGS005185.txt.gz |
| PGS005186 (VPGS_MCH) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Mean corpuscular hemoglobin variance | mean corpuscular hemoglobin | 9,498,745 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005186/ScoringFiles/PGS005186.txt.gz |
| PGS005187 (VPGS_MCV) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Mean corpuscular volume variance | erythrocyte volume | 9,500,832 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005187/ScoringFiles/PGS005187.txt.gz |
| PGS005188 (VPGS_MPV) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Mean platelet volume variance | platelet volume | 9,454,052 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005188/ScoringFiles/PGS005188.txt.gz |
| PGS005189 (VPGS_MONO) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Monocyte count variance | monocyte count | 9,489,073 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005189/ScoringFiles/PGS005189.txt.gz |
| PGS005190 (VPGS_MONO_P) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Monocyte percentage of white cells variance | monocyte percentage of leukocytes | 9,488,343 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005190/ScoringFiles/PGS005190.txt.gz |
| PGS005191 (VPGS_NEUT) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Neutrophil count variance | neutrophil count | 9,499,020 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005191/ScoringFiles/PGS005191.txt.gz |
| PGS005192 (VPGS_NEUT_P) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Neutrophil percentage of white cells variance | neutrophil percentage of leukocytes | 9,499,990 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005192/ScoringFiles/PGS005192.txt.gz |
| PGS005193 (VPGS_PLT) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Platelet count variance | platelet count | 9,451,248 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005193/ScoringFiles/PGS005193.txt.gz |
| PGS005194 (VPGS_PDW) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Platelet distribution width variance | platelet component distribution width | 9,454,587 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005194/ScoringFiles/PGS005194.txt.gz |
| PGS005195 (VPGS_RBC) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Red blood cell count variance | erythrocyte count | 9,501,618 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005195/ScoringFiles/PGS005195.txt.gz |
| PGS005196 (VPGS_RET_P) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
Reticulocyte fraction of red cells variance | reticulocyte amount | 9,470,586 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005196/ScoringFiles/PGS005196.txt.gz |
| PGS005197 (VPGS_WBC) |
PGP000723 | Xiang R et al. Nat Commun (2025) |
White blood cell count variance | leukocyte quantity | 9,503,677 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005197/ScoringFiles/PGS005197.txt.gz |
| PGS005205 (PRS130_Pca) |
PGP000726 | Benafif S et al. BJU Int (2021) |
Prostate cancer | prostate carcinoma | 130 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005205/ScoringFiles/PGS005205.txt.gz |
| PGS005206 (BMD_PRS) |
PGP000728 | Prijatelj V et al. Bone (2024) |
Bone mineral density | bone tissue density | 81 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005206/ScoringFiles/PGS005206.txt.gz |
| PGS005207 (BCC_PRS) |
PGP000729 | Gibson TM et al. Nat Med (2024) |
Basal cell carcinoma | basal cell carcinoma | 29 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005207/ScoringFiles/PGS005207.txt.gz |
| PGS005208 (Melanoma_PRS) |
PGP000729 | Gibson TM et al. Nat Med (2024) |
Melanoma | melanoma | 67 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005208/ScoringFiles/PGS005208.txt.gz |
| PGS005209 (SCC_PRS) |
PGP000729 | Gibson TM et al. Nat Med (2024) |
Squamous cell carcinoma | squamous cell carcinoma | 20 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005209/ScoringFiles/PGS005209.txt.gz |
| PGS005210 (Thyroid_PRS) |
PGP000729 | Gibson TM et al. Nat Med (2024) |
Thyroid cancer | thyroid carcinoma | 12 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005210/ScoringFiles/PGS005210.txt.gz |
| PGS005211 (AUDIT_C) |
PGP000731 | Deng WQ et al. Alcohol Alcohol (2024) |
Alcohol use disorder (3-item consumption index) | alcohol use disorder measurement | 2,338,199 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005211/ScoringFiles/PGS005211.txt.gz |
| PGS005212 (AUDIT_P) |
PGP000731 | Deng WQ et al. Alcohol Alcohol (2024) |
Alcohol use disorder (7-item problematic use index) | alcohol use disorder measurement | 384,933 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005212/ScoringFiles/PGS005212.txt.gz |
| PGS005213 (AUD) |
PGP000731 | Deng WQ et al. Alcohol Alcohol (2024) |
Alcohol use disorder by DSM-V | alcohol use disorder measurement | 336,813 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005213/ScoringFiles/PGS005213.txt.gz |
| PGS005214 (PAU) |
PGP000731 | Deng WQ et al. Alcohol Alcohol (2024) |
Problematic alcohol use | alcohol use disorder measurement | 453,914 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005214/ScoringFiles/PGS005214.txt.gz |
| PGS005215 (addiction_rf) |
PGP000731 | Deng WQ et al. Alcohol Alcohol (2024) |
Addiction risk factors | substance-related disorder | 11,627 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005215/ScoringFiles/PGS005215.txt.gz |
| PGS005216 (drinks_per_week) |
PGP000731 | Deng WQ et al. Alcohol Alcohol (2024) |
Drinks per week | alcohol consumption quality | 221,689 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005216/ScoringFiles/PGS005216.txt.gz |